From the Payment Journal when using the Suggest Vendor payments function and summarising the payment lines by Vendor. If you edit/remove an invoice from the Apply Entries window, it doesn’t update the payment line with the updated payment amount.
Vendors being paid by electronic fund transfer do not want invoices paid individually, so you have to summarise per vendor when asking Business Central to suggest payments of overdue invoices. If you remove an apply record the original payment amount remains the same and could lead to overpaying suppliers. You have to manually edit the payment amount.

This should be standard functionality for a suggested payment option. If you add an apply record to a payment line it updates the amount paid.