There should be a link between the method of payment defined in the accounts receivable module vs the payment methods defined in the commerce module. This would allow for automatic banking fees to be posted for specific payment methods at POS.

Currently, when paying a "deposit" for a customer order, a customer payment journal is posted but the method of payment field on that form is blank.

An example where this will be able to be used will be if a specific payment method charges a bank fees to the business on each transaction. With a link to the AR method of payment, this should populated on the customer payment journal. During the posting process the fees for the payment can automatically be posted in the correct account so that the business does not have to do manual journals and reconciliations on each of the transactions.